aligning DNA sequences according to their amino acid translation

[Gordon D. Pusch]

danwong at hongkong.com ("dan") writes:

> does anyone know if there's a software that would align DNA coding
> sequences based on their amino acid translation?

Try the `nap` (Nucleic-acid/protein) alignment tool written by 
Xiaoqiu Huang; it is available from many sites, such as:
<http://iubio.bio.indiana.edu/soft/molbio/align/huang/>,
<http://bioinformatics.weizmann.ac.il/software/align/huang/>, 
and
<http://www.imtech.res.in/pub/mirror_sites/iubio/iubio/align/huang/>.


-- Gordon D. Pusch   

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