IUBio Biosequences .. Software .. Molbio soft .. Network News .. FTP


Tilman Lamparter lamparte at zedat.fu-berlin.de
Thu Mar 8 04:22:11 EST 2001

can  somebody help me with PHYLIP? I want to draw a distance tree for 32
proteins and combine it with bootstrapping. I run the following
programs: SEQBOOT (makes eg 100 bootstrapts) PROTDIST (calculates the
distance for each of the 100 datasets) FITCH (constructs trees from the
distances) CONSENSE (finds the best tree) and DRAWTREE. The problem I
have is that the treefile generated by CONSENSE does not give distance
values but rather probability values. The result is thus qualitatively
different from 

How can I get a tree with distances AND bootstrap values?

Tilman Lamparter, Freie Universitaet Berlin / Pflanzenphysiologie
Koenigin Luise Str. 12-16
D 14195 Berlin, e-mail lamparte at zedat.fu-berlin.de


More information about the Bio-soft mailing list

Send comments to us at biosci-help [At] net.bio.net