Software for RNA hairpin structure search

[Gary Williams]

In article <001e01c0fa35$fde61960$d28013d4 at timour>,
Timour Ivashchenko <timour at itte.kz> wrote:

>Hi, I am looking for free software that can find possible hairpin
>structures in RNA sequence.
>Subroutines in C/C++ and Perl are also welcome.

Try 'palindrome' and 'einverted' in EMBOSS:

http://www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/einverted.html
http://www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/palindrome.html
http://www.hgmp.mrc.ac.uk/Software/EMBOSS/

Gary Williams               Tel: +44 1223 494522  Fax: +44 1223 494512
mailto:G.Williams at hgmp.mrc.ac.uk            http://www.hgmp.mrc.ac.uk/
Bioinformatics,MRC HGMP Resource Centre,Hinxton,Cambridge, CB10 1SB,UK