Have you tried PHYLIP?
http://evolution.genetics.washington.edu/phylip.html
Andrea
> I would like to test a phylogenetic tree based on microsatellites by
> bootstraping over loci. I know "microsat" do it, but for a rather
> limited number of loci. Does anybody know any program to do such
> bootstraps over a large set of individuals and loci?.
--
Andrea Hansen
Institut fuer Botanik III Tel +49 211 81 12339
Heinrich-Heine-Universitaet Fax +49 211 81 13554
Universitaetsstr.1 email : webmaster at bioinformatik.de
40225 Duesseldorf http://www.bioinformatik.de
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