Hi,
First
I am looking for a sequence alignment program which I can use to do the
following:
1. Input a set of N sequences
2. Have sequences 2 through N aligned to sequence 1
3. Display the resulting alignments in a single output file with
sequences 2 through N aligned to sequence 1
If the output can be edited (colored/shaded) that would be even
better.
Second
I would also like to find a program which will allow me to
define to portions of my protein sequence as either alpha
helix or beta-strand and then output the sequence with
the 'cylinders' and 'arrows' above the regions which i defined
as a-helix, b-strand respectively.
any help would be greatly appreciated!
becca
--
Rebecca Page
The Scripps Research Institute
10550 N. Torrey Pines Rd.
SR101/Stevens Lab
La Jolla, CA 92037
email: becca at scripps.edu
phone: 858.784.9411
fax: 858.784.9483
