In article <8brb4g$fg4$1 at franklin.ljcrf.edu>,
greg at franklin.burnham-inst.org (Dr. Greg Quinn) wrote:
> Has anyone written a general web interface for the MView program?
> (Mview extracts multiple sequence alignments from BLAST output).
> Ideally, I'd like to perform a BLAST search via the NCBI BLAST web
> server and then extract a nicely formatted MSA from that.
> Thanks for any comments.
We have developed a program that takes a complete genbank file, we use
those of 200kb poxvirus genomes, does BLAST searches on all the annotated
CDS regions and pipes the results through MView.
It may be overkill for what you want.
PS to Greg: have you had any luch with BSU yet? I think it actually works
as planned now!
Dept Biochemistry and Microbiology
University of Victoria