IUBio

BLAST jobs crashing - any ideas?

Gary Williams gwilliam at hgmp.mrc.ac.uk
Wed Mar 8 08:49:26 EST 2000


In article <200003070946.JAA00019 at tin.hgmp.mrc.ac.uk>,
Gary Williams <gwilliam at hgmp.mrc.ac.uk> wrote:
>
>We are seeing increasing numbers of BLAST searches failing like this:
>
>---------------------------------------------------------------------------
>Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
>Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
>"Gapped BLAST and PSI-BLAST: a new generation of protein database search
>programs",  Nucleic Acids Res. 25:3389-3402.
>
>Query= Z92844, 151798 bases, CBD5EE91 checksum.
>         (151,798 letters)
>
>Database: new
>           312,486 sequences; 300,934,448 total letters
>
>Searching.......................................
>---------------------------------------------------------------------------

I forgot to mention that we are using the latest version (2.0.11)

Thanks to all those who suggested that I upgrade to this version :-)

Gary






More information about the Bio-soft mailing list

Send comments to us at biosci-help [At] net.bio.net