Gary Williams <gwilliam at hgmp.mrc.ac.uk> écrit :
>> We are seeing increasing numbers of BLAST searches failing like this:
>> ---------------------------------------------------------------------------
> Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
> Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
> "Gapped BLAST and PSI-BLAST: a new generation of protein database search
> programs", Nucleic Acids Res. 25:3389-3402.
>> Query= Z92844, 151798 bases, CBD5EE91 checksum.
> (151,798 letters)
>> Database: new
> 312,486 sequences; 300,934,448 total letters
>> Searching.......................................
> ---------------------------------------------------------------------------
>> With no further output or error messages.
> It exits with a status value of 1.
>> We are running BLAST on SPARC and Intel machines with Solaris.
> We have large amounts of swap space available.
> (For example: Memory: 5120M real, 153M free, 322M swap in use, 12G swap free)
>> Is anyone else seeing this sort of thing?
We noticed this behaviour under Digital Unix v4.0f too, with the lastest
blast v2.0.11
> Does anyone have any idaes as to the cause or cure?
It seems to be platform independant ... ;-)
--
Nicolas Joly
Informatique Scientifique
Institut Pasteur, Paris.
