TM Helix graphical output

[Jeffrey Keen]

In article <3950EB5B.1B99CB07 at immv.unizh.ch>, removethis
<srohrer at rzu-mailhost.unizh.ch> wrote:

> I've seen pictures of transmembrane proteins which were presented as
> pearls on a string for the TM segments and loops for the
> cytoplasmic/extracellular domains. What program does that, and where can
> i get it?

I use VHMPT, 

http://ibms.ibms.sinica.edu.tw/~mjhwang/vhmpt/

http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=9927715&dopt=Abstract

you need tcl/tk installed but it is very flexible and easy to use.