I have some experience with BSU. In order for BSU to properly set-up the
final index.html file, your sequence files should be of a certain format.
The files in your 'indir' must have the same name as what is present after
the '>' in the first line of the file (the files should be in FASTA format).
For example:
>Gene1
AACCTG...
The above file should be called 'Gene1' in your 'indir'. Once you get all
of the files in your 'indir' in this format, I think some of your problems
will be solved.
scott
<nospam at nospam.net> wrote in message news:3947D680.E1D6A872 at nospam.net...
> Looking for help setting up either Blast Search Updater, or DBWatcher
> for remote database searching. Both would be using blastcl3, which is
> working well on my system (Redhat 6.1). Does anyone have these
> successfully installed on Linux? BSU seems to be having trouble finding
> the results files in order to put them in it's final index.html output.
> DBWatcher has to be recompiled for use of blastcl3 on Linux, and I've
> run up against a brick wall with a cc make error. Frederic Plewniak has
> been very helpful, but it's slow going. Has anyone done this already?
>> Thanks,
> Mike Holloway
>holloway-1 at medctr.osu.edu>
