yet another one is tacg, which will allow ~500K of input sequence (on the
web site, unrestricted for the commandline version).
handles iupac degeneracies, regex's, TRANSFAC Matrices, complex rules (A
AND (B OR (C XOR D))), any sequence form input, upload your own patterns to
search for, etc...
V3 exists only as commandline and partial web interface, V2 is at:
http://24.1.175.29/tacg
Mail me if you want more info.
hjm
Ketchup wrote:
>> GeneDoc will give a report on that sort of thing.
>> www.psc.edu/biomed/genedoc
>> On Wed, 07 Jun 2000 18:25:04 +0000, Paraic Kenny <paraic at icr.ac.uk>
> wrote:
>> >Hi Aidan
> >
> >Webcutter is quite a user friendly website, with all the functions (and
> >more) that you need.
> >
> >http://firstmarket.com/cutter/cut2.html> >
> >Regards
> >
> >Paraic Kenny
> >
> >
> >Aidan Weatherill wrote:
> >>
> >> I have a long bit of dna sequence, and I want a program that will search
> >> for specified restriction sites, and report to me the number and the size
> >> distribution of the fragments, anyone know of a sutable program?
> >>
> >> I dont realy care where they are, I just want to know there distribution.
> >>
> >> Cheers
> >>
> >> Aidan
--
Cheers,
Harry
Harry J Mangalam -- (949) 856 2847 -- hjm at ncgr.org || mangalam at home.com
