Functional equivalent of GCG Findpatterns?

Dr. Greg Quinn greg at franklin.burnham-inst.org
Wed Jan 19 10:09:40 EST 2000

Many thanks for all the helpful replies and pointers to online services.

Catherine  Letondal (letondal at pasteur.fr) wrote:
: In article <85vr9r$ff0$1 at jetsam.uits.indiana.edu>, gilbertd at bio.indiana.edu (Don Gilbert) writes:
: >Take a look at scan_for_matches/PatScan if you want. It allows
: You may find a Web form for scan_for_matches here:
: http://bioweb.pasteur.fr/seqanal/interfaces/scan_for_matches.html
: You can either enter simple pattern Searching for particular sequences with
: mismatches, deletions or insertions. Or enter your own complex patterns file
: as described in the documentation.
: >you to use simple or complex regular expressions to scan sequence
: >data.  It's user interface is not close to GCG's though.
: >Written by Ross Overbeek.  Available various places including
: > iubio.bio.indiana.edu in the molbio/pattern/ software folder.
: >
: >- don
: >
: >--
: >-- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405
: >-- gilbertd at bio.indiana.edu
: >
: -- 
: Catherine Letondal -- Pasteur Institute Computing Center

Computational Biology Group
The Burnham Institute
(formerly La Jolla Cancer Research Inst.)
10901 North Torrey Pines road
La Jolla
Phone:(619) 646 3103
Email: greg at franklin.ljcrf.edu

More information about the Bio-soft mailing list

Send comments to us at biosci-help [At] net.bio.net