"Rachel M. Kadel-Garcia" wrote:
>> Does anyone here have an understanding of phrap quality scores
> beyond what's in the docs? I'm trying to figure out how to
> assign similar quality scores to assemblies not done with phrap,
> and I'm resorting to spelunking in the source, but it's rough
> going.
>> Rachel
Phrap, I believe, is not the program assigning the quality scores.
Phred is. Phrap uses the phred quality scores to do its alignments.
Do you have the Phred docs?
I presume that you don't have the chromats, otherwise you could run them
through phred and get the quality scores.
srlasky
--
Stephen R. Lasky, Ph.D. #
University of Washington #
Department of Molecular Biotechnology #
HSB K336a box 357730 #
Seattle, WA, 98195 USA #
email: srlasky at u.washington.edu #
Phone: 206-616-5865 #
Fax: 206-685-7301 #
#########################################
