repeat search

Fred dynamin at hotmail.com
Wed Apr 19 00:22:00 EST 2000

I posted a similar question a month back in "proteins".  The best
replies that I found useful are shown below, but none are very
satisfying to me.  Anybody got better ideas please???

Repro is the most famous.  The only working copy I have found is

SIM - Alignment Tool for protein sequences
(note, here, enter the same sequence as seequence 2)

SAPs give repeats as part of its result.

I don't know if these programs will handle "genomes", but they work ok
for proteins.

Phil, Sydney
At hotmail on dynamin at .....

Vladislav Grebenyuk wrote:
> Hi there,
> I'm looking for repeats in Sponge genome. There are something around 500
> clones already sequenced in this lab. But there is no any software for
> repeat search here.
> Could anybody help me?
> Vlad

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