I posted a similar question a month back in "proteins". The best
replies that I found useful are shown below, but none are very
satisfying to me. Anybody got better ideas please???
Repro is the most famous. The only working copy I have found is
SIM - Alignment Tool for protein sequences
(note, here, enter the same sequence as seequence 2)
SAPs give repeats as part of its result.
I don't know if these programs will handle "genomes", but they work ok
At hotmail on dynamin at .....
Vladislav Grebenyuk wrote:
>> Hi there,
> I'm looking for repeats in Sponge genome. There are something around 500
> clones already sequenced in this lab. But there is no any software for
> repeat search here.
> Could anybody help me?