I posted a similar question a month back in "proteins". The best
replies that I found useful are shown below, but none are very
satisfying to me. Anybody got better ideas please???
Repro is the most famous. The only working copy I have found is
http://mathbio.nimr.mrc.ac.uk/~rgeorge/repro/
SIM - Alignment Tool for protein sequences
http://www.expasy.ch/tools/sim-prot.html
(note, here, enter the same sequence as seequence 2)
SAPs give repeats as part of its result.
http://www.isrec.isb-sib.ch/software/SAPS_form.html
I don't know if these programs will handle "genomes", but they work ok
for proteins.
Phil, Sydney
At hotmail on dynamin at .....
Vladislav Grebenyuk wrote:
>> Hi there,
> I'm looking for repeats in Sponge genome. There are something around 500
> clones already sequenced in this lab. But there is no any software for
> repeat search here.
> Could anybody help me?
> Vlad
