Hi Bernd,
DNATools may do at least some of the tasks you mention. It contains
several search functions (e.g. blast on local data bases + interface
to NCBI formatdb which allows you to build your own data bases).
DNATools handles - depending on RAM/MHz - several thousand sequences
in a single project. Look at the homepage at www.crc.dk/phys/dnatools.htm.
Regards
Soeren
Bernd Epping wrote:
>> Hello,
>> I search for a pc-program (Win-NT or Linux) with the following features:
>> 1. DNA-Homology-Searches (around 500 sequences)
> 2. DNA-Sequence String Search
> 3. phylogeny-tree applications
> 4. DNA-Alignment
>> I tried a lot of programs, like ARB (linux), Oligo 5.0, Vector NTI,
> Genetrap, Omiga. There is no program which makes a homology-search of
> different sequences. Is there anyone who knows such a program???
>> best regards
>> Bernd
>> --
> ----------------------------------------------------------------------------
> -----------
> Bernd Epping
> Bio-Engineer
--
Soeren W. Rasmussen, Dr. scient.
Department of Physiology
Carlsberg Laboratory
Copenhagen, Denmark
swr at crc.dk, http://www.crc.dk/phys
