Alexander Kozik wrote:
>> I need advice with installation of PHRED / PHRAP / CONSED on Linux.
>> Do I need Motif to run CONSED on Linux?
> Is it possible to use Lesstif libraries instead of Motif?
>> Does anybody use PHRED / PHRAP / CONSED on Slackware?
>> Does PHRED read ABI 3700 files?
>> Thanks a lot in advance.
>> Alexander Kozik
>> Dpt. of Biological Chemistry
> School of Medicine
> UCD
> Davis CA
I have set up consed/phred/phrap (cross-match/swap) on redhad 5.1, 5.2
and 6.0. No motif and no problem. You might want to take a look at the
documentation that comes with the phrap distribution and with consed,
then just make and make install them and see if they work. I think the
installer looks for libraries that it needs and stops if it doesn't find
them.
Yes, phred reads 3700 files. I am not convinced it gives a very good
quality assessment (some of the runs on our 3700s look better than what
phred says they are), and they work in assemblies.
hope that helps
srlasky
--
Stephen R. Lasky, Ph.D. #
University of Washington #
Department of Molecular Biotechnology #
HSB K324 box 357730 #
Seattle, WA, 98195 USA #
email: srlasky at u.washington.edu #
Phone: 206-616-5865 #
Fax: 206-685-7301 #
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