BLASTing short sequences

[Mathieu Ingouff]

Hi netters,

I have a couple of protein sequences that are quite short  <20 AA, so
when i blast it, it is not always nice
Is there any reliable software similar to BLAST-p function that can work
with short sequences?

Thank you

Mat


____________________________________
  Mathieu Ingouff, PhD student
  SLU, Department of  Forest Genetics
  Genetikvagen 1B, Box 7027
  S-750 07 Uppsala, Sweden

  email: mathieu.ingouff at sgen.slu.se
  fax: +46.18.67.32.79.
 phone: +46.18.67.32.32.
____________________________________