IUBio

BLASTing short sequences

Mathieu Ingouff Mathieu.Ingouff at sgen.slu.se
Fri May 21 08:13:13 EST 1999


Hi netters,

I have a couple of protein sequences that are quite short  <20 AA, so
when i blast it, it is not always nice
Is there any reliable software similar to BLAST-p function that can work
with short sequences?

Thank you

Mat


____________________________________
  Mathieu Ingouff, PhD student
  SLU, Department of  Forest Genetics
  Genetikvagen 1B, Box 7027
  S-750 07 Uppsala, Sweden

  email: mathieu.ingouff at sgen.slu.se
  fax: +46.18.67.32.79.
 phone: +46.18.67.32.32.
____________________________________






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