IUBio

publication quality alignments w/Motifs?

Ketchup ketchup*NOSPAM* at cris.com
Sat Mar 13 19:45:53 EST 1999


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On Tue, 09 Mar 1999 09:48:24 -0500, Jonathan Epstein
<Jonathan_Epstein at nih.gov> wrote:

>Hi,
>
>What do people out there use for producing publication-quality multiple
>alignments?
>
>In particular, I need to highlight some Motifs, and also should some
>discontinuity in some of the sequences, where I don't want to show
>hundreds of residues of uninteresting sequence.
>
>I have a PC on my desk, and have access to numerous Unix hosts,
>including one using GCG.  In a pinch, I can use a Mac running MacVector.
>
>I need to get these diagrams out quickly, so am especially interested in
>freeware and/or time-bombed demos.
>
>I understand that Vector NTI is pretty well thought of these days for
>Windoze users.  Does the demo version have the sorts of capabilities
>which I mention?
>
>TIA,
>
>- Jonathan





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