IUBio

EST clustering

Alessandro Guffanti guffanti at tigem.it
Fri Jun 11 12:17:26 EST 1999


Hi. I suggest using cap2 / cap3 software for EST assembly. The
algorithm seems to be particularly fit for these tasks.
The programs are available from X.Huang: huang at mtu.edu.

An on-line version is available for testing at

http://hercules.tigem.it/ASSEMBLY/assemble.html
http://hercules.tigem.it/cgi-bin/uniestass.pl
http://hercules.tigem.it/BLASTEXTRACT/estextract.html

You will need a (quite powerful) UNIX workstation anyway.

Best wishes,

Alessandro Guffanti, TIGEM.


>Tvenkatesh at synapticcorp.com wrote:
>> 
>> Dear All
>> I am looking for EST clustering software. I would appreciate any
>> suggestions.
>___________________________






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