Hi:
I have a question of using Repbase with RepeatMasker.
We have received a licensed version of hrap/cross_match/swat package
and I installed it on our Digital alpha unix machine.
I run "make" file and got the executable of the "cross_match".
I have test run the "RepeatMasker" on the same machine and it worked
fine (I compared the output from our "RepeatMasker" and from
http://www.mgu.har.mrc.ac.uk/repeat/RepeatMasker and they yeilded the
same result). It seems that "RepeatMasker" use the files in "Libraries"
subdirectory to do its comparision.
Now we have also licensed the "Repbase" and got the following files:
README.html humrep.ref invrep.ref plnapp.ref pseudo.ref
simple.ref
README.txt humsub.ref mamapp.ref plnrep.ref rodapp.ref
vrtrep.ref
humapp.ref invapp.ref mamrep.ref pseapp.ref rodrep.ref
So my question is:
In order to use Repbase with RepeatMasker, is it just simply to move
the "ref" files into
the "Libraries" subdirectory of the RepeatMasker? Or I need to do
something else such as to modify RepeatMasker's perl code?
If you reply, please send a copy to zlmei at hotmail.com
Thanks in advance.
Guang Mei
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