Hi Chris,
> I'm interested in searching the protein database with 200 proteins on a
>routine basis.
>>I have a system to do the searches (FASTA) in batch locally (via a perl
>script), but I'd like to be notified when there's a new hit with good
>score.
>You may want to check :
http://www-igbmc.u-strasbg.fr/BioInfo/LocalDoc/DBWatcher/
Cheers,
Fred