>I have used and would recommend MEME, available via a Web interface at:
>http://www.sdsc.edu/meme/meme/website/>If you're really keen, the maker of Genedoc has ported the MEME code to
>run under Windoze DOS mode available at: ftp://ftp.netcom.com/pub/ka/karl/>Regards, Peter.
Dear Peter:
Thank you for your reply!
Actually, I have used MEME before. But it need your give it several parameters:
Short or Wide motif, how many you want to get etc. And, it did not use Alignment methods.
So, what I prefer is I send an alignment in to it, and it give out motif(highly conserve)
region. I think PROSITE and BLOCKS are make in this way. But I can not find a suitble software
that can run under my PC and be merged into a batch work.
Could you give me more comments?
Thank you!
Sam
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Xie Tao
Bioinformatics & Protein Engineering Lab.
Shanghai Institute of Biochemistry, Academia, Sinica
P. O. BOX 33#
320# Yue Yang Road, Shanghai, P. R. China, 200031
Telephone: (86)-(21)-64374430-255
Fax:(86)-(21)-64338357
E-mail: xietao at sunm.shcnc.ac.cn
Web-Page: http://202.127.24.111/xietao/
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