> > I'm looking for some free software to parse GenBank flat file format or
> > better ASN.1 format.
> perl -MCPAN install Bundle::Convert::BER
I have looked at Bundle::Convert::BER and I think it only converts
ASN.1 TO and FROM its binary format. I had heard that there was a
Perl ASN.1 module in the works from NCBI within the SEALS project
http://www.ncbi.nlm.nih.gov/Walker/SEALS/
Haven't heard of a finished product though. Please post if you have
good news.
Joe
--
Joseph Ryan
Programmer
National Human Genome Research
On Tue, Aug 24, 1999 at 01:48:16PM -0500, Jonathan Epstein wrote:
> Try:
> perl -MCPAN install Bundle::Convert::BER
>> Haven't tried it myself. Please let me know if you have any success.
>> - Jonathan
>>> Arne Mueller wrote:
>> > Hi All,
> >
> > I'm looking for some free software to parse GenBank flat file format or
> > better ASN.1 format. Is there any perl or better python module available
> > to read in an ASN.1 file and to presnet all the information in a
> > datastructure (hashes, lists, objects whatever ...)?
> >
> > I'm interested in genomic ORFs but flat FASTA amino acid files do not
> > provide enough information for my purpose, also I'd like (have) to
> > automize most of the dataprocessing. I know there must be a parser
> > (written in C) included in the NCBI toolkit but I'd like to have
> > something written in perl or python.
> >
> > Any suggestions,
> > Thanks alot,
> >
> > Arne
> >
> > --
> > Arne Mueller
> > Biomolecular Modelling Laboratory
> > Imperial Cancer Research Fund
> > 44 Lincoln's Inn Fields
> > London WC2A 3PX, U.K.
> > phone : +44-(0)171 2693405 | fax :+44-(0)171-269-3534
> > email : a.mueller at icrf.icnet.uk | http://www.icnet.uk/bmm/>>
