Looking for Linux software to trim low quality ends from sequence

[Piotr Kozbial]

chapmanp at em.agr.ca wrote:
> 
> We are using PHRED to produce a fasta sequence and quality files for
> analysis. We are now looking for a program which will evaluate the ends
> and give us the useable limits of good sequence

http://www.sanger.ac.uk/Software/EMBOSS/Apps/trimseq.shtml