Dear Unsatisfied,
Why don't you try using advanced BLAST with ther pam250 table? This will give you considerably longer matches.
--
Richard C Moore, PhD
Prusiner Lab
University of California San Francisco
Tel: (415) 502 1949
Fax: (415) 476 8386
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://iubio.bio.indiana.edu/bionet/mm/bio-soft/attachments/19990817/0513bf94/attachment.html