See ftp://iubio.bio.indiana.edu/molbio/java/source/ for
most of my java work. The sequence analysis and phylogeny
apps and supporting libraries are in dclapjava-src.zip,
and the flybase project software is in fbjava-source.zip
This is freely reusable java source. See also the java/apps/
section for the runnable apps.
-- gilbertd at bio.indiana.edu