protein alignment program needed.

[michael.baron at dltthis.bbsrc.ac.uk]

un691cs at genius.embnet.dkfz-heidlebrg.de wrote:
> 
> how can I align protein sequences, and show with special symbols
> identical, conserved and none conserved amino acids (for a publication)
> ?
> 
> clemens
You don't say which platform you want. ClustalW is available for
Mac/Wintel/Unix, or use ClustalX, which has a GUI interface to
ClustalW's alignment engine.

GeneDoc is an excellent alignment editor and display program for
Windoze, BoxShade is available for Unix (and as a Web server) from:

http://www.isrec.isb-sib.ch/software/BOX_form.html

and MacBoxshade is available through the same page if you are using
MacOS.

HTH

Michael Baron
(who admits to being the author of MacBoxShade)