Hi:
I have a genbank datafile (filename:genbankdata) in fasta format that I am
running "formatdb" on.
The file is in directory /data1/genbank/database which is 100GB in size
searchsrv1> ls -l
total 12139628
-rw-r--r-- 1 genbank system 668 Apr 1 11:55 formatdb.log
-rw-r--r-- 1 genbank system 9616926535 Apr 1 08:32 genbank.seq
-rw-r--r-- 1 genbank system 2587447829 Apr 1 09:15 genbankdata
When I run
/data1/program/ncbiblast/formatdb -i genbankdata -p F -o T
It core dumped after about 40 min. And here is the formatdb.log:
========================[ Apr 1, 1999 10:43 AM ]========================
Version 2.0.8 [Jan-05-1999]
Started database file "genbankdata"
FATAL ERROR: CoreLib [001.000] Failed to allocate 62768120 bytes
And I looked the disk space:
searchsrv1> df -k Filesystem 1024-blocks Used Available Capacity Mounted
on root_domain#root 532176 66362 458776 13% / /proc 0 0 0 100%
/proc usr_domain#usr 4147848 536348 3576896 14% /usr
search_domain#programs 17780000 16 17773576 1% /programs
search1_domain#data1 106665000 21567728 85067880 21% /data1
And idea where is source of error?
If you reply, please send a copy to gmei at pavonis.com
Thanks.
Guang Mei
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