Jonathan Epstein wrote on Thu, 24 Sep 1998:
> Does anyone have a working program that can compare
> mass-spec ion sets obtained from an LCQ instrument against the
> dbEST database?
>> This seems to require a 6-frame translation of dbEST, preferably in
> FASTA format. I realize that many of the translated products will
> be bogus.
>> Does anyone have software to perform this translation? The
> preferred target platform is a DEC alpha running Unix, but Wintel
> 95/NT and SGI Irix are also possible candidates.
>> TIA,
>> - Jonathan
I believe the SEALS package has a program called wimklein that will
do this for you. It's all perl, so it should work for you.
http://www.ncbi.nlm.nih.gov/Walker/SEALS
Chris
______
Christopher W Botka Phone: (415)476-5379
Sequence Analysis Consulting Service Fax: (415)502-1755
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