I'm in search of prokaryotic transcription terminators prediction
programs. I looked at different index of services in bioinformatics,
but I found nothing related to this topic. The terminators I'm
interested in are the rho-independant ones, ie those with a G-C rich
stem-loop structure followed by a polyU, like this one:
U C
U G
G-C
A-U
C-G
G-C
C-G
C-G
5'-CCCACAG CAUUUU-3'
Does anybody knows where I can find this kind of program? I have
the paper published by Brendel and Trifonov (1984) in NAR but I
suppose that more recent algorithms must have been published.
Thanks,
--
Guy Perriere - Laboratoire BGBP - Universite Claude Bernard Lyon 1
43, bd du 11 Novembre 1918 - 69622 Villeurbanne Cedex - France
http://pbil.univ-lyon1.fr/members/perriere/guy.html