Bioinformatics system design project --- request comments

Mark Evans evans at funtv.com
Wed Oct 14 20:29:39 EST 1998


My company is interested in putting together an in-house system that would
be able to identify quality ORF's from assembled public human EST/GenBank
data.  One of the main problems, as always, is budget limitations. We
would like to be able to build such a system from publicly available or
low cost software. In other words, we want to take something like Unigene,
clean it up, generate consesi, check for the presence of full length ORF
and sort full length vs. not yet full length.  What search programs,
contig assembly programs etc. would work best?

Looking forward to hearing your comments,

Mark Evans

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