Alignment statistics

[michael.baron at deletetheobvious.bbsrc.ac.uk]

Fourie Joubert wrote:
> 
> Hi
> 
> I need software to calculate statistics on multiple alignments, eg.
> %identity, homology, etc.
> I understand some programs can generate a matrix comaring each sequence
> in the set to all others. 


Both MacBoxshade ( v 2.0.1)
(ftp://ulrec3.unil.ch/pub/boxshade/MacBoxshade/ ) and the C port of
Boxshade ( ftp://ulrec3.unil.ch/pub/boxshade/3.3.1/ ) will do this.

Michael

*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+
Michael D. Baron Ph.D. (michael.baron at bbsrc.ac.uk)

Senior Research Scientist
Institute for Animal Health
Ash Road,
Pirbright,
Surrey,
U.K.