First, you need to find a program that converts NA into AA-- such as ESEE
(ftp://iubio.bio.indiana.edu/molbio/ibmpc/esee3zip.exe
). Then you need a program to align the AA's.....
You also need to know the translation table for your species in question.....
my question is why would you want to do it this way.... there will be very
little variation in the AA sequences compared to the NA sequences, unless you
are looking at protein structure/function?
good luck,
harold berninhausen
