The PEDANT genome analysis server has been updated.
Three new genomic sequences have been added:
- M.thermoautotrophicum
- A.fulgidus
- B.burgdorferi
The Bacillus subtilis genome is now complete.
The following genomes have been updated:
- S.cerevisiae
- M.genitalium
- M.pneumoniae
- M.jannaschii
- Synechocystis sp.
- H.influenzae
- E.coli
Your comments and criticisms are welcome.
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PEDANT: Protein Extraction, Description, and ANalysis Tool
http://pedant.mips.biochem.mpg.de/frishman/pedant.html
Features:
- Twelve complete and one partial genomes plus one plasmid analyzed so
far:
S.cerevisiae
M.genitalium M.jannaschii
Synechocystis sp.
H.influenzae
E.coli
H.pylori
B.subtilis
M.thermoautotrophicum
A.fulgidus
B.burgdorferi
S.solfataricus (fragment)
Rhizobium sp. (plasmid)
- Exhaustive functional and structural classification of
the predicted open reading frames from fully sequenced
genomes using a combination of sequence comparison and
prediction techniques
- Functional assignment of ORFs on the basis of FASTA2 and BLAST2
similarity searches supplemented by detection of PROSITE
patterns and motifs and comparisons with conserved sequence
blocks
- Automatic attribution of sequences with significantly related
PIR entries to one of the PIR super-families
- Functional classification of gene products through similarity
searches against several curated master gene sets from
bacteria and yeast with manually assigned functional classes
- Extraction of available 3D information through Smith-Waterman
similarity comparisons of every sequence with the STRIDE
database of secondary structure assignments
- Secondary structure and transmembrane region predictions
- Detection of low-complexity and coiled coil regions
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Dmitrij Frishman, Petra Maierl, and Hans-Werner Mewes
Munich Information Centre for Protein sequences/GSF
http://www.mips.biochem.mpg.de
M.pneumoniae
