ClustalW problem

Francois Jeanmougin pingouin at crystal.u-strasbg.fr
Wed Dec 2 03:22:51 EST 1998

In article <slrn769hbf.4jb.aiyar at ebv.oncology.wisc.edu>,
	aiyar at ebv.oncology.wisc.edu (Ashok Aiyar) writes:

> Perhaps you have encountered a Mac-specific bug in clustalw-1.74.  BTW,
> have you tried this with clustalx?

	In fact it is the same algorithm, so it should give the same result.
	Using ClustalX would help finding the good matrix. In such a case, it
	is also usefull to log the process in a log file.

	If Bernard could send me both input and output file, I could have a
	look at what really happen in Clustal. The difference in length is a
	known problem that we are trying to work around, as described in the
	recent TiBS computer corner.

François Jeanmougin     | groupe de bioinformatique / bioinformatics groupe
tel:(+33) 3 88 65 32 71 | IGBMC BP 163 67404 Illkirch France

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