> Has anyone modified Ian Korf's BP2.pm to support NCBI BLAST v2.0x
Wayne,
NHGRI::Blastall.pm is not a modification of Ian Korf's code but the
functionality is similar. I have included the Release announcement.
NHGRI::Blastall.pm is Alpha software but should be helpful. If you
have questions, comments, or suggestions send me mail to
@
jfryan^nhgri.nih.gov
---------------------------------------------------------------------
This message is to announce the first public alpha release of
NHGRI::Blastall.pm. Docs and other info available at
http://genome.nhgri.nih.gov/blastall/. Feedback is appreciated.
This module is designed to run NCBI's standalone BLAST or initialize
existing BLAST reports and provide access for various elements of
the report. Blastall.pm also provides a filter method which allows
for filtering against an ecoli, repeat or any other database.
The motivation behind NHGRI::Blastall.pm was for it
to work with the forthcoming version of our NHGRI-WebBLAST
http://genome.nhgri.nih.gov/webblast/.
NHGRI::Blastall.pm and NHGRI-WebBLAST are public domain software.
------------------------------------------------------------------------
In article <35C5A8BB.5A212216 at lilly.com>,
Wayne Kauffman <kauffman_e_wayne_ii at lilly.com> wrote:
> BLAST parsing time....
>> Has anyone modified Ian Korf's BP2.pm to support NCBI BLAST v2.0x and is
> the modified BP2 code available? I am trying not to re-invent the wheel
> if it has been already accomplished. :-)
>> Wayne Kauffman
> Eli Lilly and Company
> Lilly Corporate Center, MS0444
> Indianapolis, IN 46285
>> 317-276-9750
>wayne at lilly.com>>
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