Blast2 - MSPcrunch

Michele Clamp michele at well.ox.ac.uk
Wed Mar 12 06:57:52 EST 1997


I thought I'd ask here before I get my perl fingers out.

Has anyone got a script to parse blast2 output into MSPcrunch output? I
realise you can't have exact MSPcrunch output as we're now dealing with
gapped alignments but something that converts all that nasty multi-line
alignment output into something  more friendly would be appreciated.


Michele Clamp
Wellcome Trust Centre for Human Genetics, Windmill Road, Oxford, UK.
Tel: +44 1865 740 065             Email: michele at well.ox.ac.uk

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