Have you tried GeneDoc (http://www.cris.com/~ketchup/genedoc.shtml), it is
IBM type program that sounds like exactly what you need. You might also
download the latest version of Clustal (X is the newest) that will do
alignments and bootstrap trees.....
It is a very good program- it is my main program!
Say 'hello' to Karl for me.
harold berninghausen