Martin Hilbers wrote:
>> Hi folks,
>> So far, the new release of clustalw works fine for me when used
> interactively, but if I use command line parameters, like:
>> clustalw tmp.seq /gapopen=15.0 /gapext=0.1
>> I get the following error:
>> ERROR: Could not open sequence file tmp.seq/gapopen=15.0/gapext=0.1
>> So it seems that it looses the whitespace between the command line
> arguments (this was on unix - SGI irix and DEC OSF/1)
>> Any suggestions ?
Oops - sorry folks.... Just read note 15 of the readme file..
15. The standard command line separator for UNIX systems has been
changed from
'/' to '-'. ie. to give options on the command line, you now type
clustalw input.aln -gapopen=8.0
instead of clustalw input.aln /gapopen=8.0
Cheers (blushing...)
Martin
--
-------------------------------------------------------------------
| Martin Hilbers http://www.dci.clrc.ac.uk/Person.asp?m.p.hilbers |
| SEQNET | E-mail: m.p.hilbers at dl.ac.uk |
| Daresbury Laboratory | Tel: +44-1925-603492 |
| Daresbury, Warrington | Fax: +44-1925-603100 |
| Cheshire WA4 4AD | SEQNET is the UK national EMBNet node |
| United Kingdom | http://www.seqnet.dl.ac.uk/ |
-------------------------------------------------------------------
