GeneDoc will do some of this kind of thing for PC/Windows. If you try
it, look up the Differences/Top Sequence Mode.
GeneDoc can be found at
mpdougla at syr.edu (Michael Douglas) wrote:
> I'm looking for a program that will allow me to compare one sequence to a
>data set of numerous other sequences in a way that will give distance and
>residue substitutions. I've tried DNAstar's Megalign but that will only give
>me distance/res. subs. to a consensus sequence, not the sequence I specify.
>Any info will be greatly appreciated. Thanks
>SUNY-College of Environmental Science and Forestry
>Environmental and Forest Biology
>329 Illick Hall
>1 Forestry Drive
>Syracuse, NY 13210