Steve Johnson wrote:
>> Can anyone suggest a program that will calculate a "similarity" value
> for two protein sequences and then randomize one sequence and
> recalculate the similarity. I need to generate some good statistical
> values for some fairly similar sequences. I know that GCG's bestfit will
> do this however, I would like to get more than 100 randomizations.
> Thanks.
>> Steve Johnson
>sljohnsn at staff.uiuc.edu
The AMPS package will do this. See our WWW and ftp site for details.
Geoff.
--
Geoffrey J. Barton, Laboratory of Molecular Biophysics, University of
Oxford,
Rex Richards Building, South Parks Road, Oxford OX1 3QU, U.K.
mailto:geoff.barton at ox.ac.uk, Tel: +44 1865 275368, Fax: +44 1865
510454,
ftp://geoff.biop.ox.ac.uk,http://geoff.biop.ox.ac.uk
