Mol. Biol. Software

Ashok Aiyar aiyar at ebv.oncology.wisc.edu
Thu Dec 18 21:55:46 EST 1997

On Thu, 18 Dec 1997 14:21:54 -0500,
William Coetzee (coetzeew at is2.nyu.edu) wrote:
>Which is the best computer program to use in the molecular biology
> under linux:
>    database of clones, primers
don't know

>    restriction anaylsis
can't go wrong with Harry Mangalam's tacg 2.0

>    multiple alignment
two good choices: dialign & clustalw/clustalx

>    fragment assembly
i have used phrap/phred quite a bit

>    profile anaylsis
>    ORF analysis
you could try seqsee.

You should also take a look at Patrick Finerty's web pages, which
I think are at http://zifi.genetics.utah.edu for links to Linux
binaries for various programs.

Ashok Aiyar, Ph.D.
McArdle Laboratory for Cancer Research
aiyar at ebv.oncology.wisc.edu

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