Allignements visualization

[Hartmut Schirmer]

Matteo Turri wrote:
> 
> Hi All,
>             I use Clustalw to align my protein sequences; I'm looking for a
> software that provides flexible tool for sequences allignements
> visualization, something that will shade the regions of similarity and
> omology.

Try BoxShade, see

  http://www.techfak.uni-kiel.de/~hsc/BoxShade/ 

for lastest version.

There's a Web based service available at 

  http://ulrec3.unil.ch/software/BOX_form.html 

Hartmut
-- 
Hartmut Schirmer                   | Phone: +49-431-77572-709  FAX:-703
Automatisierungs- & Regelungstech. | hsc at techfak.uni-kiel.de
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