On Tue, 29 Oct 1996, Wade Walke wrote:
> I'm looking for a program that can accept input of multiple small (10-20
> bp long) DNA sequences (possibly hundreds of different sequences) then
> compare and analyze them for various consensus motifs. These sequences
> will not all fall into a single consensus motif so I cannot use a simple
> alignment program. I what to know if any such program exists and if not
> is there anyone willing to write such a program given the proper
> incentive?
>> Wade Walke
>dwwalke at scripps.edu>
The multiple sequence alignment version of the BCM search launcher at:
<http://dot.imgen.bcm.tmc.edu:9331/multi-align/multi-align.html>
does this if you chose the MEME option.
For MEME documentation have a look at:
<http://www.sdsc.edu/MEME/meme.2.0/website/>
hope it helps,
Emmanuel
Emmanuel Skoufos, Ph.D.
Yale University School of Medicine
Section of Neurobiology
333 Cedar Street, 236 FMB
New Haven, CT 06520
e-mail:emmanouil.skoufos at yale.edu
Phone: (203) 785-4336
Fax: (203) 785-6990
gene discovery page:
http://www.geocities.com/CapeCanaveral/1915/gdp.html
