I am looking for a PC (windows or Dos) program for mapping transcription
factor sites within a sequence of my choice. I am aware of the the
TransFac database and the new search utility. but I am not finding this
very usefull for my needs. I would like something that gives me a
printout of the alignment and the name of the transcription factor.
I am also aware of signalscan, but I am not able to recompile the C
code. If someone out there has already done that I would be greatfull
for a copy.
Is there a way to search the TFD database at NCBI?