On 04 Oct 1996 16:41:22 -0600, zinc <zinc at zifi.genetics.utah.edu> wrote:
>i'm attempting to compile a list of software that either people have
>claimed runs under Linux or that is known to run under Linux for the
>people at Caldera (Caldera is Ray Noorda's ( of Novell fame ) new
>company).
There are several others ....
SignalScal - scan for transcription factor binding sites
- version 4.07, written in C, compiles fine
- ftp://biosci.umn.edu/pub/sigscan/unix
PIMA - pattern induced multiple sequence alignment
- version 1.40, written in C, compiles fine
- ftp://gc.bcm.tmc.edu/pub/software/pima
Predator - structural prediction based on multiple alignments
- version 1.0, written in C, compiles fine
- ftp://ftp.ebi.ac.uk/pub/software/unix/predator
ClustalW - pairwise and multiple alignments
- version 1.60, written in C, compiles fine
- ftp://ftp.ebi.ac.uk/pub/software/unix
Seqsee - protein sequence analysis package
- version 1.2, written in C, compiles fine
- available upon request from seqsee at procyon.biochem.ualberta.ca
Pratt - pattern discovery in sets of unaligned sequences
- version 2.0, written in C, minor changes
- ftp://ftp.ii.uib.no
Primer3 - PCR primer design
- release 0.1, written in C, compiles fine
- ftp://genome.wi.mit.edu
tacg - restriction analysis
- version 1.5, written in C, compiles fine
- ftp://mamba.bio.uci.edu/pub/tacg/
I'm sure you already have references for other common packages such
as Don Gilbert's sequence conversion utility - readseq, GDE, NCBI blast
etc. etc.
Later,
Ashok
--
Ashok Aiyar, Ph.D.
Department of Oncology email: aiyar at ebv.oncology.wisc.edu
University of Wisconsin-Madison tel: (608) 262-6697
