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howdy folks,
i'm attempting to compile a list of software that either people have
claimed runs under Linux or that is known to run under Linux for the
people at Caldera (Caldera is Ray Noorda's ( of Novell fame ) new
company).
here is my list so far. if people have additions i'd love to have
them. it would be nice if you could include a brief description or a
URL pointing to a web page with a description. also, a URL for the
source or binary executable would be super..
thanks,
- -patrick finerty
biochem grad student, u of utah
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a lot of these are in FORTRAN so how well they compile is probably due
to how good the fortran support on a system is...
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something called VMD (Visual Molecular Dynamics) is almost ported:
http://www.ks.uiuc.edu/Research/vmd/
=======
Molden
fortran source, got it from
ftp://ftp.caos.kun.nl/pub/molgraph/molden
=======
RasMol
available on sunsite, also available here:
it _is_ possible to compile this for 16 bpp display, i've done it and
used it a lot myself. you just have to change the Makefile to use
- -DSIXTEENBIT instead of -DEIGHTBIT or -DTHIRTYTWOBIT
=======
XtalView
also in fortran (crystallographers love fortran). have to sign a
license to get source but not for binaries...
http://www.sdsc.edu/CCMS/Packages/XTALVIEW/
it looks like binaries are avail for Linux...(according to the above
page)
=======
WhatIf
http://swift.embl-heidelberg.de/whatif/
licensed for a small fee to academics...
=======
Procheck
http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html
obtain source from:
ftp://128.40.46.11/pub/procheck/tar3_4/procheck.tar.Z
this is more fortran fun and games. it seems to compile almost but i
haven't tried to use it yet...
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MOPAC
i searched all over for this - couldn't find the source! only a ton
of damned html manuals. a post to bionet.software is in order...
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i heard the GAMESS programs compile under Linux but i did not try them
as you have to go through a little effort to get them...
GAMESS-US
http://www.msg.ameslab.gov/GAMESS/dist.menu.html
site license is free to everyone but must sign a form...
GAMESS-UK
http://gserv1.dl.ac.uk/CCP/CCP1/gamess.html
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Entrez/Cn3D from ncbi
database searching tools (for remote database queries)
the ncbi package...
linux binary of the network database search tools:
ftp://ncbi.nlm.nih.gov/blast/network/blast2/
this requires the network Entrez program to be configured, get a linux
binary here: ftp://ncbi.nlm.nih.gov/entrez/network/linux.tar.Z
=======
fasta ftp.virginia.edu/pub/fasta/fasta30t6.shar.Z
used default makefile but changed THR_CC= to be blank.
THR_CC=
then make sall
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RNA folding related software:
Viena RNA package:
compiles fine under Linux but Makefile needs tweaking (hell, i managed
to get it to work...)
ftp://ftp.itc.univie.ac.at/pub/RNA/ViennaRNA-1.1b.tar.gz
=======
naview
this compiles fine under Linux
http://www.ibc.wustl.edu/~zuker/ref/BRUR88.htmlftp://snark.wustl.edu/pub/naview.tar.Z
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safety deserve neither liberty nor safety." -- Benjamin Franklin (1773)
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