> I will appreciate if anyone can help me
> get a version of the Smith-waterman software.
Smith-Waterman sequence alignment software is available at
http://www-hto.usc.edu/software/seqaln/
as an extensible library with standalone programs for local, global,
fit, overlap, tandem repeat, etc., alignment. That page also contains
a link to a sequence alignment web server, as well as online
documentation. If anyone would like more information regarding this
package, please send me mail.
--Paul Hardy
(phardy at usc.edu)
