Protein Secondary Structure Program

Hector Lucero hlucero at bu.edu
Mon Nov 11 17:22:05 EST 1996


I need to know if there is any program on the net that can take a protein 
sequence and give a sort of graphycal output of its secondary structure. I 
currently use the method by Gardiner in PCGENE program. That gives a linear 
representation of the secondary structure like this:

xxxxxxxxxxxxx*****- - - - - xxxxx- - >>>- - xxxxx etc., 


xxxxx = helical,

****** = coil,  

- - - - - = extended and 

>>>> = turn

Does anybody knows of any program that outputs the  putative  secondary
structure structure of the protein in a graphycal form.?

Please let me know.


Hector Lucero

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