I need to know if there is any program on the net that can take a protein
sequence and give a sort of graphycal output of its secondary structure. I
currently use the method by Gardiner in PCGENE program. That gives a linear
representation of the secondary structure like this:
xxxxxxxxxxxxx*****- - - - - xxxxx- - >>>- - xxxxx etc.,
xxxxx = helical,
****** = coil,
- - - - - = extended and
>>>> = turn
Does anybody knows of any program that outputs the putative secondary
structure structure of the protein in a graphycal form.?
Please let me know.