Alex Chang wrote:
>> This may be a FAQ.
>> My friend is looking for a multi-sequence alignment program, preferably a
> MS-Window based program.
>> Thanks
>> Alex Chang
> Pathology
> University of British Columbia
>achang at hivnet.ubc.ca
I use ClustalW (a DOS program) to generate the inital lineup, and then Genedoc to
edit and print it. There are links to both of these (and other alignment programs) in
the Software section of my Really Quite Useful MolBio Page:
http://www.lars.bbsrc.ac.uk/plantsci/molbiol/molbiol.html
The only hassle is getting the files into the right format for Clustal. I use the GCG
program TOPIR to convert a file of sequence names in GCG format into a single PIR
file. I feel there must be an alternative to this that doesn't require access to
GCG, and doesn't involve assembling the PIR file with a text editor. Any suggestions?
Andy
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Email : andy.phillips at bbsrc.ac.uk : University of Bristol
Home : andy at cycad.demon.co.uk : IACR Long Ashton Research Station
Phone : +44-1275-549257 : Long Ashton
Fax : +44-1275-394281 : Bristol, BS18 9AF, UK
WWW : http://www.lars.bbsrc.ac.uk/plantsci/molbiol/andy.html
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